汪超(wangchao13@genomics.cn),博士,生物信息副研究员。
研究方向:群体遗传学,比较基因组及功能基因组学。聚焦利用群体基因组数据,探讨不同物种或群体间的遗传变异和进化关系,揭示自然选择、基因流动和遗传漂变等机制对群体结构和多样性的影响;通过比较不同物种或个体的基因组,揭示基因组结构和功能的保守性与多样性,探索基因组进化的规律和机制;关注基因的功能注释和调控网络的构建,通过整合多种组学数据,解析基因与表型之间的关系,进而理解基因在生物体发育、适应和疾病中的作用。
现任岗位:华大研究院 华中分院 精准所 MOHA大队列研究 生物信息副研究员
教育背景:华中农业大学 动物科学 博士
参与项目:
1.中国西北地方人群遗传解析(2023.11-2024.9,华大基因):利用中国西北地方人群基因组数据,分析人群特异性突变,群体结构及分化历史,及筛选群体适应性及健康相关遗传位点。
2.家犬全基因组组装(2018.9-2021.1,乌普萨拉大学):利用长度长及多种测序数据构建高质量家犬参考基因组
3.慢性肾病遗传位点鉴定(2019.9-2022.9,乌普萨拉大学):选用拳狮犬作为模型,分析慢性肾病的遗传风险位点。
4.肿瘤比较基因组研究(2017.7-2020.10,乌普萨拉大学):建立具有与人相似肿瘤的家犬模型,分析肿瘤发生的遗传风险因子及关键驱动基因。
5.Dog10K计划(2021.10-2022.10,乌普萨拉大学):Dog10K计划为多国协作的大规模测序项目。利用家犬基因组测序数据,构建不同品种遗传特征图谱,探究家犬各品种的分化及起源历史。
6.达尔文雀群体特性分析(2015.3-2017.10,乌普萨拉大学)对加拉帕戈斯群岛上不同达尔文雀种群进行基因组数据分析,研究其群体结构及环境适应性。
7.240哺乳动物比较基因组学(2020.6 -2023.10,乌普萨拉大学)比对240种哺乳动物基因组,探究基因组中高保守性区域及其生物功能重要性。
论文:
1.Lingaas F, Tengvall K, Jansen JH, Pelander L, Hurst MH, Meuwissen T, Karlsson Å, Meadows JRS, Sundström E, Thoresen SI, Arnet EF, Guttersrud OA, Kierczak M, Hytönen MK, Lohi H, Hedhammar Å, Lindblad-Toh K, Wang C. Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs. PLoS Genet. 2023 Jan 24;19(1):e1010599.
2.Wang C, Wallerman O, Arendt ML, Sundström E, Karlsson Å, Nordin J, Mäkeläinen S, Pielberg GR, Hanson J, Ohlsson Å, Saellström S, Rönnberg H, Ljungvall I, Häggström J, Bergström TF, Hedhammar Å, Meadows JRS, Lindblad-Toh K. A novel canine reference genome resolves genomic architecture and uncovers transcript complexity. Commun Biol. 2021 Feb 10;4(1):185.
3.Wang C, Wang H, Zhang Y, Tang Z, Li K, Liu B. Genome-wide analysis reveals artificial selection on coat colour and reproductive traits in Chinese domestic pigs. Mol Ecol Resour. 2015 Mar;15(2):414-24.
4.Rohdin, Cecilia; Wang, Chao; Brander, Gustaf; Rondahl, Veronica; Karlsson, Åsa; Friling, Lisa; Fischetti, Anthony; Meadows, Jennifer; Häggström, Jens; Jäderlund, Karin Hultin;,Mutations in the CYP27B1 gene cause vitamin D dependent rickets in pug, Journal of Veterinary Internal Medicine, 2023. 37
5.Sullivan PF, Meadows JRS, Gazal S, Phan BN, Li X, Genereux DP, Dong MX, Bianchi M, Andrews G, Sakthikumar S, Nordin J, Roy A, Christmas MJ, Marinescu VD, Wang C, Wallerman O, Xue J, Yao S, Sun Q, Szatkiewicz J, Wen J, Huckins LM, Lawler A, Keough KC, Zheng Z, Zeng J, Wray NR, Li Y, Johnson J, Chen J; Zoonomia Consortium§; Paten B, Reilly SK, Hughes GM, Weng Z, Pollard KS, Pfenning AR, Forsberg-Nilsson K, Karlsson EK, Lindblad-Toh K. Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science. 2023 Apr 28;380(6643):eabn2937.
6.Tengvall K, Sundström E, Wang C, Bergvall K, Wallerman O, Pederson E, Karlsson Å, Harvey ND, Blott SC, Olby N, Olivry T, Brander G, Meadows JRS, Roosje P, Leeb T, Hedhammar Å, Andersson G, Lindblad-Toh K. Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis. Commun Biol. 2022 Dec 8;5(1):1348. doi: 10.1038/s42003-022-04279-8.
7.Megquier K, Turner-Maier J, Swofford R, Kim JH, Sarver AL, Wang C, Sakthikumar S, Johnson J, Koltookian M, Lewellen M, Scott MC, Schulte AJ, Borst L, Tonomura N, Alfoldi J, Painter C, Thomas R, Karlsson EK, Breen M, Modiano JF, Elvers I, Lindblad-Toh K. Comparative Genomics Reveals Shared Mutational Landscape in Canine Hemangiosarcoma and Human Angiosarcoma. Mol Cancer Res. 2019 Dec;17(12):2410-2421.
8.Lamichhaney S, Han F, Berglund J, Wang C, Almén MS, Webster MT, Grant BR, Grant PR, Andersson L. A beak size locus in Darwin's finches facilitated character displacement during a drought. Science. 2016 Apr 22;352(6284):470-4. (IF=47)
9.Lamichhaney S, Berglund J, Almén MS, Maqbool K, Grabherr M, Martinez-Barrio A, Promerová M, Rubin CJ, Wang C, Zamani N, Grant BR, Grant PR, Webster MT, Andersson L. Evolution of Darwin's finches and their beaks revealed by genome sequencing. Nature. 2015 Feb 19;518(7539):371-5.
10.Rubin CJ, Megens HJ, Martinez Barrio A, Maqbool K, Sayyab S, Schwochow D, Wang C, Carlborg Ö, Jern P, Jørgensen CB, Archibald AL, Fredholm M, Groenen MA, Andersson L. Strong signatures of selection in the domestic pig genome. Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19529-36.


