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郭立东

郭立东(guolidong@genomics.cn),博士。

研究方向:生信算法开发(基因组组装,单细胞、空间组学的配套分析软件和算法研究)和海洋物种进化发育问题研究(联合基因组、单细胞和空间组学研究鱼类的器官演化、发育和再生问题)

现任岗位:华大研究院 青岛分院 地球所 生物信息副研究员

教育背景:中国科学院大学 基因组学 博士

参与项目:

1.海洋生物多组学的实验和生信技术开发

2.涡虫再生3D时空研究

3.器官再生的机制解析和应用探索

论文:

1.GUO Lidong, LI Yao, QI Yanwei, HUANG Zhi, HAN Kai, LIU Xiaobin, LIU Xin, XU Mengyang, FAN Guangyi. VT3D: a visualization toolbox for 3D transcriptomic data [J]. Journal of Genetics and Genomics, 2023.

2.GUO Lidong, XU Mengyang, WANG Wenchao, GU Shengqiang, ZHAO Xia, FANG Chen, WANG Ou, XU Xun, SEIM Inge, FAN Guangyi, DENG Li, LIU Xin. SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme [J]. BMC Bioinformatics, 2021, 22(1).

3.XU Mengyang, GUO Lidong, GU Shengqiang, WANG Ou, Zhang Rui, PETER A Brock, FAN Guangyi, LIU Xin, XU Xun, DENG Li, ZHANG Yongwei. TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads [J]. Gigascience, 2020, 9(9).

4.XU Mengyang, GUO Lidong, DU Xiao, LI Lei, PETER A Brock, DENG Li, WANG Ou, CHEN Fang, WANG Jun, JIANG Zhesheng, HAN Jinglin, NI Ming, YANM Huanming, XU Xun, LIU Xin, HUANG Jie, FAN Guangyi. Accurate haplotype-resolved assembly reveals the origin of structural variants for human trios [J]. Bioinformatics, 2021, 37(15): 2095-102.

5.XU Mengyang, GUO Lidong, QI Yanwei, SHI Chengcheng, LIU Xiaochuan, CHEN Jianwei, HAN Jinglin, DENG Li, LIU Xin, FAN Guangyi. Symbiont-screener: A reference-free tool to separate host sequences from symbionts for error-prone long reads [J]. Frontiers in Marine Science, 2023, 10.

Google scholar 链接:https://scholar.google.com/citations?user=YpIRtcwAAAAJ&hl=en 


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